Index

_

__init__() (medil.examples.ExampleUDGAndMCM method), [1] (medil.graph.ReducibleUndDepGraph method), [1] (medil.graph.UndirectedDependenceGraph method), [1] (medil.independence_testing.XiCorrResult method), [1] (medil.models.DevMedil method), [1] (medil.models.GaussianMCM method), [1] (medil.models.MedilCausalModel method), [1] (medil.models.NeuroCausalFactorAnalysis method), [1] (medil.models.Parameters method), [1] (medil.vae.Block method), [1] (medil.vae.Decoder method), [1] (medil.vae.Encoder method), [1] (medil.vae.SparseLinear method), [1] (medil.vae.VariationalAutoencoder method), [1]

A

add_edges() (medil.graph.ReducibleUndDepGraph method) (medil.graph.UndirectedDependenceGraph method) add_isolated_verts() (in module medil.ecc_algorithms)

add_mcm() (medil.examples.ExampleUDGAndMCM method) add_udg() (medil.examples.ExampleUDGAndMCM method) assign_dof() (medil.models.NeuroCausalFactorAnalysis method), [1]

B

biadj() (in module medil.sample)

Block (class in medil.vae) branch() (in module medil.ecc_algorithms)

C

choose_nbrhood() (medil.graph.ReducibleUndDepGraph method) compute_sigma() (medil.models.DevMedil method) convert_to_nde() (medil.graph.ReducibleUndDepGraph method) (medil.graph.UndirectedDependenceGraph method)

correlation (medil.independence_testing.XiCorrResult attribute), [1] count() (medil.independence_testing.XiCorrResult method), [1] cover_edges() (medil.graph.ReducibleUndDepGraph method)

D

dcor_test() (in module medil.independence_testing) dcov() (in module medil.independence_testing)

Decoder (class in medil.vae) DevMedil (class in medil.models)

E

Encoder (class in medil.vae) estimate_UDG() (in module medil.independence_testing)

ExampleUDGAndMCM (class in medil.examples) extra_repr() (medil.vae.SparseLinear method)

F

find_clique_min_cover() (in module medil.ecc_algorithms) find_heuristic_1pc() (in module medil.ecc_algorithms) fit() (medil.models.DevMedil method) (medil.models.GaussianMCM method), [1] (medil.models.MedilCausalModel method) (medil.models.NeuroCausalFactorAnalysis method)

fit_penalized_lse() (medil.models.DevMedil method) fit_penalized_mle() (medil.models.DevMedil method) forward() (medil.vae.Decoder method) (medil.vae.Encoder method) (medil.vae.SparseLinear method) (medil.vae.VariationalAutoencoder method)

G

GaussianMCM (class in medil.models)

get_dag_from_biadj() (in module medil.visualize)

I

index() (medil.independence_testing.XiCorrResult method), [1]

L

latent_sample() (medil.vae.VariationalAutoencoder method)

log() (medil.models.NeuroCausalFactorAnalysis method)

M

make_aux() (medil.graph.ReducibleUndDepGraph method) (medil.graph.UndirectedDependenceGraph method) max_cliques() (in module medil.ecc_algorithms) mcm() (in module medil.sample) medil module medil.ecc_algorithms module medil.evaluate module medil.examples module medil.graph module medil.independence_testing module medil.models module medil.sample module

medil.vae module medil.visualize module MedilCausalModel (class in medil.models) min_perm_squared_l2_dist() (in module medil.evaluate) min_perm_squared_l2_dist_abs() (in module medil.evaluate) module medil medil.ecc_algorithms medil.evaluate medil.examples medil.graph medil.independence_testing medil.models medil.sample medil.vae medil.visualize

N

n_choose_2() (medil.graph.ReducibleUndDepGraph static method) (medil.graph.UndirectedDependenceGraph static method)

NeuroCausalFactorAnalysis (class in medil.models)

P

Parameters (class in medil.models)

pvalue (medil.independence_testing.XiCorrResult attribute), [1]

R

reconstruct_cover() (medil.graph.ReducibleUndDepGraph method) recover_ug() (in module medil.evaluate) reducible_copy() (medil.graph.ReducibleUndDepGraph method) (medil.graph.UndirectedDependenceGraph method) ReducibleUndDepGraph (class in medil.graph) reduzieren() (medil.graph.ReducibleUndDepGraph method) reset() (medil.graph.ReducibleUndDepGraph method)

reset_parameters() (medil.vae.SparseLinear method) rho() (medil.models.DevMedil method) rm_edges() (medil.graph.ReducibleUndDepGraph method) (medil.graph.UndirectedDependenceGraph method) rule_1() (medil.graph.ReducibleUndDepGraph method) rule_2() (medil.graph.ReducibleUndDepGraph method) rule_3() (medil.graph.ReducibleUndDepGraph method)

S

sample() (medil.models.DevMedil method) (medil.models.GaussianMCM method), [1] (medil.models.MedilCausalModel method) (medil.models.NeuroCausalFactorAnalysis method) sfd() (in module medil.evaluate)

show_dag() (in module medil.visualize) show_obs_adj_mat() (in module medil.visualize) show_obs_dcor_mat() (in module medil.visualize) show_pairwise_plot() (in module medil.visualize) sigma() (medil.models.DevMedil method) SparseLinear (class in medil.vae)

U

UndirectedDependenceGraph (class in medil.graph)

V

validation_lse() (medil.models.DevMedil method)

validation_mle() (medil.models.DevMedil method) VariationalAutoencoder (class in medil.vae)

X

xicor_test() (in module medil.independence_testing)

xicorr() (in module medil.independence_testing) XiCorrResult (class in medil.independence_testing)